Hi John, Select your clade, genome, assembly and track of choice. Add your gene identifiers by either pasting in the list or uploading it as a file. Select the output format "selected fields from primary and related tables", enter a file name if desired and click "get output".
If your track is not a UCSC Genes track, you will need to connect to it from kgXref or some other knownToX table. To do this scroll down to the linked tables, check kgXref or your appropriate table, scroll to the bottom and click "Allow selection from checked tables". This will allow you access to the GO tables. Once you have access to the GO tables either from starting with the UCSC Genes track itself or linking to it through a knownToX table scroll down to the linked tables, check "goaPart" and click "Allow selection from checked tables". Repeat this for the "go" "term" table. Select the following fields: go.goaPart.goId, go.term.name and the name of the gene in your primary table. Click "get output". I hope this information is helpful. Please contact us again at [email protected] if you have any further questions. Best, Mary ------------------ Mary Goldman UCSC Bioinformatics Group On 7/5/11 5:41 AM, John Curtin wrote: > Hi > How do you get GO classifications from table browser in a table format for a > given list of genes. > Thanks > John > > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
