Great! Thank you very much!
Lo On Thu, Jul 7, 2011 at 6:33 PM, Vanessa Kirkup Swing <[email protected]> wrote: > Hi Lo, > > The best tool for this would be the Table Browser. To get to the table > browser click on on "Tables" from the blue navigation bar. > > Set the clade, genome, and assembly. > > Then you will need to set the following: > > group: Gene and Gene prediction tracks > track: UCSC Genes > table: knownGene > region: genome > identifiers (names/accessions): click on "paste list" and paste in the > gene symbol following the instructions. > output format: selected fields from primary and related tables > > click "get output" > > select the fields you want displayed. > > click "get output" > > Hope this helps lead you in the right direction. If you have further > questions, please contact us at genome at soe.ucsc.edu > > Vanessa Kirkup Swing > UCSC Genome Bioinformatics Group > > > > ---------- Forwarded message ---------- > From: Lo <[email protected]> > Date: Thu, Jul 7, 2011 at 6:30 AM > Subject: [Genome] Get gene symbol from the UCSC gene track-knowGene > To: [email protected] > > > Hello, > > I would like to obtain the coordinates of somes "genes" that appear in > the "UCSC gene based on RefSeq, Uniprot, GenBank,CDD and Comparative > genomics" track. The table associated is the knownGene, where I can > get the name coded by "uc"_something_ else. But I am looking for the > gene symbol, for instance: DQ584667. How could I get what "uc"_labels > are a set of genes if I know the gene symbol? > > thanks in advance > > Lo > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
