I am trying to understand BLAT query type provided on the web: DNA, protein, translated DNA and translated DNA and Blat's guess.
1. DNA: input DNA sequence will be searched against DNA database 2. protein: input amino acid sequence will be searched against translated DNA database 3. translated DNA: input DNA sequence. BLAT will translate the input DNA sequence in all 6 reading frames and compare to the 6 frame translated DNA database (user does not provide translation but provides DNA). 4. translated RNA: input DNA sequence. BLAT will translate the DNA query in 3 reading frames on one strand and compare to the 3 frame translated DNA database.(again, user does not provide translation but provides DNA) Is this correct? _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
