Hi, When I try to run the bigWigToWig utility, it seems to output results in BedGraph format rather than Wiggle format. For example, I downloaded one of the ENCODE ChIP-Seq signal files, wgEncodeOpenChromChipMcf7CmycVehSig.bigWig. When I try to convert it into wig format, however, I get BedGraph output:
$ bigWigToWig -chrom=chr22 wgEncodeOpenChromChipMcf7CmycVehSig.bigWig chr22.wig $ head chr22.wig #bedGraph section chr22:16050039-16055390 chr22 16050039 16050339 0 chr22 16050339 16050387 0.0001 chr22 16050387 16050413 0.0002 chr22 16050413 16050432 0.0003 chr22 16050432 16050448 0.0004 chr22 16050448 16050461 0.0005 chr22 16050461 16050474 0.00006 chr22 16050474 16050485 0.0007 chr22 16050485 16050496 0.0008 I get the same behavior with the current linux 64 bit binary version of the utility available for download, as well as with a version that I compiled from the Kent utility source tree. I feel like I'm probably missing something terribly obvious, but I've searched the archives and other related sites and can't seem to figure out what's going on. Is the tool supposed to behave this way? Thanks in advance, Chris _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
