Hi Meharji, We have a track for snp131 on the genome preview browser. Just keep in mind that tracks on the preview browser have not undergone thorough testing and may change:
http://genome-preview.ucsc.edu/cgi-bin/hgGateway?org=Dog&db=canFam2&hgsid=2566535 You may also download the data by using the Table Browser on genome-preview: http://genome-preview.ucsc.edu/cgi-bin/hgTables Select canFam2, group: Variation and repeats, track: snp131, table: snp131. You can select various output formats. Downloading the whole db131 table in BED format is about 28.3 MB in size. If you have additional questions, please contact the mailing list: [email protected]. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ---------- Forwarded message ---------- From: Meharji Arumilli <[email protected]> Date: Thu, Jul 14, 2011 at 4:16 AM Subject: [Genome] dbSNP for canFam2 To: [email protected] Hi, I working with dog sequencing data and using canFam2 build for my work. I am in need of dbSNP database for canFam2 build which i cannot find in the databases present in canFam2. I could find it in canFam1 but not in canFam2. Could you please recommend anything regarding this or is there any option available to convert dbSNP from canFam1 to canFam2 ? Looking forward to hearing from you at the latest. Thank you Best regards mehar _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
