Hi Fabrice,
You're on the right path. Depending on if you would like to download or
display data in the browser, a different search portal can be accessed
from ENCODE Search (http://genome.ucsc.edu/ENCODE/search.html). To
download the data use "File Search" and to visualize data use "Track
Search". At either portal page there will be two tabs, you will want to
use the "Advanced" tab in order to utilize the meta-data that is linked
to ENCODE data. You will want to use the "ENCODE Terms" search list to
add meta-data terms to find the correct data. Based on the question, the
two terms that would be useful are:
* Cell, Tissue or DNA Sample: Can be used in conjunction with the Cell
Description Page (http://genome.ucsc.edu/ENCODE/cellTypes.html) to
pick cell lines you are interested in.
* Experimental (Assay) type: Can be used to filter on data types such
as, ChIP-Seq and MethylRrbs
Please use the Encode Portal (http://genome.ucsc.edu/ENCODE/) to search
for more information about ENCODE meta-data terms.
-
Greg Roe
UCSC Genome Bioinformatics Group
On 7/12/11 6:06 AM, Fabrice Tourre wrote:
> Dear expert,
>
> I want to get regulation region restrict to lymphoblast tracks from
> ENCODE. I am just interesting to lymphoblast cell lines.
>
> How can I get transcription factor binding sites, DNA methylation
> sites and acetylation sites, etc, separately?
>
> I have visited these urls, but still not get the point.
>
> http://genome.ucsc.edu/ENCODE/cellTypes.html
> http://genome.ucsc.edu/ENCODE/search.html
> http://genome.ucsc.edu/ENCODE/downloads.html
>
> Thank you very much in advance.
>
> Best wishes,
> _______________________________________________
> Genome maillist - [email protected]
> https://lists.soe.ucsc.edu/mailman/listinfo/genome
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