Can you please specify an example problem ? Preferably one that is different between the test site and the public site if that is possible.
--Hiram ----- Original Message ----- From: "asas asasa" Sent: Sunday, July 17, 2011 3:26:31 PM Subject: Re: [Genome] ensembl versions in the test site Hi Luvina and all, for the builds in the main site, in enseGene table, after summation of all exon sizes in exonstarts,exonEnds (using zero-based start, and one-based end), we get exactly the total size of the transcript, as it appears in the relevant ensembl fasta file. Yet, for builds in the test site, with fragmented transcript sequences (occurence of large Ns blocks within the transcripts), the exon sizes do not sum up correctly. Generally, I would like to be able to exactly map the transcript to the genomic sequences, so how this could be done ? is there a way to do so despite the forgoing problem ? Assaf _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
