Hi Heng, Unfortunately, we don't have any other methods to get what you are looking for. One of our engineers says that the regions could be deficient because this sequence is actually missing from the assembly, or because it didn't align (which seems less likely).
If you have further questions, please contact the mailing list: [email protected]. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ---------- Forwarded message ---------- From: 潘恒 <[email protected]> Date: Thu, Jul 21, 2011 at 12:32 PM Subject: [Genome] Question relevant to the MAF file of the yeast To: [email protected] To who might be concerned, Thank you for developing and maintaining the UCSC genome browser. It is very useful to my research. I am currently working on the yeast evolution and I need the sequence of the 3'UTR and 5'UTR for each of the yeast species. I have found that there is no definition for the 3'UTR and 5'UTR, so we just used the 200 base pairs of the Upstream and the Downstream sequence as substitution. However, most of the Upstream and Downstream sequences from the MSA file of the yeast are deficient, so could you please to provide some other methods through which I could get these sequences? Thank you Best WIshes Heng _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
