Hi Jesse, Thank you for your feedback. I will pass this suggestion on to management for consideration.
You can change the coloring of the alignments from the track controls page of your track, which you can get to by right-clicking on the track and selecting one of the configure options. Here is some information about the coloring options: http://genome.ucsc.edu/goldenPath/help/hgBamTrackHelp.html Please contact the mail list ([email protected]) again if you have any further questions. Katrina Learned UCSC Genome Bioinformatics Group Jesse Rodriguez wrote, On 07/22/11 12:56: > Hello, > > Just as some feedback, I think the default forward/reverse coloring of the > bam reads makes it very difficult to spot mismatches in the reads. This is > made worse by the fact that the mismatches are only one pixel wide instead > of being an entire base in width. It would be nice if the forward/reverse > coloring could be customized at the very least since lighter colors would > make the red of the mismatches stand out more, even if they weren't made 1 > base wide. > > Jesse Rodriguez > > PhD Candidate > Biomedical Informatics Program > Stanford University > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
