I think the BedGraph Track Format may be fit for me. Because my dataset is also like this:
chromA + startposition1 end position1 dataValue1 experiment1 chromA - startposition2 end position2 dataValue2 experiment1 .... chromB + startposition2 end position2 dataValue2 experiment1 chromB - startposition2 end position2 dataValue2 experiment1 ..... chromA + startposition1 end position1 dataValue1 experiment2 chromA - startposition2 end position2 dataValue2 experiment2 .... chromB + startposition2 end position2 dataValue2 experiment2 chromB - startposition2 end position2 dataValue2 experiment2 ..... I also have several experiment for different chromosome. Can I put them in one file? In addition, I have different value for the (+/-) strand for the same chromosome, Can I draw them in one graph, the +strand is on the top and - strand is on the below? In additon, I don't know if I use the BedGraph format file, I should use which demand to store this file into my mysql database? Like for example, like for the wig format, in the final gff3 file, we can add this: ctgA . microarray_oligo 1 50000 . . . Name=example;wigfile=/var/www/gbrowse2/databases/volvox Do I need to convert the bedgraph file into gff3 file? Thanks! jingjing _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
