Hello Bob, Thanks for the quick answer, especially on a Sunday! Downloading the SQL dump only solves part of the problem, as one still needs to convert to BED or any other format.
I found that exporting the table browser results to Galaxy and then downloading the import works very well. Cheers, Thomas On Mon, Aug 1, 2011 at 00:47, robert kuhn <[email protected]> wrote: > Should go to the downloads page and download entire file > instead of using Table Browser. > > http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/ > > regards, > > --b0b kuhn > ucsc genome bioinformatics group > > On 7/31/2011 3:30 PM, Thomas Juettemann wrote: >> >> Hi all, >> >> I tried the same and I think he is right, the resulting file is too >> big as my connection times out as well. >> >> Clade: Mammal >> Genome: Human >> Assembly: hg19 >> group: mRNA and EST >> region: genome >> output: BED >> -->get Output >> Create one BED record per: Whole alignment. >> -->get Bed >> >> Some results are displayed, but not all (loading stops). >> >> Cheers, >> Thomas >> >> On Sun, Jul 31, 2011 at 16:25, Carsten Raabe <[email protected]> >> wrote: >>> >>> Dear Madame, dear Sir, >>> >>> my name is Carsten and I am working at the institute of experimental >>> Pathology at Muenster University in Germany. I would like to download a >>> BED formated text-file that contains all human exon EST coordinates >>> (including its orientation) via the table browser. I tried so using the >>> table browser options, however I failed. Could you please suggest what >>> would be the appropriate way accessing the data. In addition I would >>> like to download the (>>> human) Other EST file but I expect the very >>> same problem. ( I guess it is connected with the file size itself) >>> >>> Thanks in advance, >>> >>> C. >>> _______________________________________________ >>> Genome maillist - [email protected] >>> https://lists.soe.ucsc.edu/mailman/listinfo/genome >>> >> >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
