Hi Chris,

Currently there is no way to upload a custom overlay track (i.e. a 
multiWig). However, we have a new feature called Track Hubs, which allow 
users to create their own sets of tracks remotely and display them in 
the browser. Using Track Hubs, you can display these overlay/multiWig 
tracks. Here's the documentation on Track Hubs:

http://genome.ucsc.edu/goldenPath/help/hgTrackHubHelp.html

You'll want to read the full documentation to set up a hub, but you can 
scan the docs for "multiWig" to see info that pertains to the type of 
tracks you are looking to display.

Please let us know if you have any additional questions: [email protected]

-
Greg Roe
UCSC Genome Bioinformatics Group

On 8/1/11 11:39 AM, Chris Benner wrote:
> Hello -
>
> Is it possible to create custom "overlap tracks" such the ones produced by
> the ENCODE consortium?  I'm couldn't find any information on the site about
> making overlap tracks.  I'm a huge fan of the Genome Browser and fairly
> savvy with generating custom tracks, and I (and several others) are very
> interested in the overlap tracks as a way to more conveniently display
> information.  Thanks in advance,
>
> Chris
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