Hello,
I am trying to use liftover for my SNPs from hg19 to hg18. But I have my SNP
files in either gff3 format or vcf (v4.1). Is it possible to use these files to
execute the command
liftOver -gff oldFile.gff3 hg19ToHg18.over.chain newFile.gff3 unMapped or
liftOver -vcf oldFile.vcf hg19ToHg18.over.chain newFile.vcf unMapped
Or do I have to convert them into BED format, if so, is there any tool that
could do this ?
Thank you,
Warm Regards,
Nandini Badarinarayan
_______________________________________________
Genome maillist - [email protected]
https://lists.soe.ucsc.edu/mailman/listinfo/genome
