Hello Yan, Please see this previously answered mailing list question explaining the error messages:
https://lists.soe.ucsc.edu/pipermail/genome/2007-November/015057.html For an explanation of the "minimum ratio of bases that must remap" parameter please see these previously answered mailing list questions: https://lists.soe.ucsc.edu/pipermail/genome/2008-March/015810.html https://lists.soe.ucsc.edu/pipermail/genome/2011-May/025889.html Hopefully this information was helpful and answers your question. If you have further questions or require clarification feel free to contact the mailing list at [email protected]. Regards, Pauline Fujita UCSC Genome Bioinformatics Group http://genome.ucsc.edu On 07/27/11 06:29, Yan Jiao wrote: > Dear All, > > > > I was trying to use lift genome annotations for mapping different built: > http://genome.ucsc.edu/cgi-bin/hgLiftOver > > > > but some regions it couldn't give me the mapping result, e.g. > > Failed input regions: > > > > #Split in new > > chr1:0-245500000 > > #Partially deleted in new > > chr21:0-46900000 > > > > I noticed by changing "Minimum ratio of bases that must remap" I could get > more regions mapped, I'm just wondering what happened when I change this > parameter from 0.95- 0.55 > > > > Many thanks > > > > YAn > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
