Thanks! I try to build the source tree according to the instructions on:
http://genome.ucsc.edu/admin/jk-install.html However, when I use this instructions: jingjing@ubuntu:~/kent/src/hg$ make compile cd lib && make make[1]: Entering directory `/home/jingjing/kent/src/hg/lib' make[1]: `../../lib/i686/jkhgap.a' is up to date. make[1]: Leaving directory `/home/jingjing/kent/src/hg/lib' cd protein/lib && make make[1]: Entering directory `/home/jingjing/kent/src/hg/protein/lib' make[1]: `../../../lib/i686/jkpbap.a' is up to date. make[1]: Leaving directory `/home/jingjing/kent/src/hg/protein/lib' ( cd cartReset && echo cartReset && make compile) cartReset make[1]: Entering directory `/home/jingjing/kent/src/hg/cartReset' gcc cartReset.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -pthread -lssl -lcrypto /usr/lib/libpng.a -lm /usr/lib/mysql/libmysqlclient.a -lz gcc: /usr/lib/mysql/libmysqlclient.a: No such file or directory make[1]: *** [compile] Error 1 make[1]: Leaving directory `/home/jingjing/kent/src/hg/cartReset' make: *** [cartReset.compile] Error 2 Then after i run the command like this: jingjing@ubuntu:~/kent/src/hg$ make install DESTDIR=/destination/prefix CGI_BIN=/cgi-bin/path cd lib && make make[1]: Entering directory `/home/jingjing/kent/src/hg/lib' make[1]: `../../lib/i686/jkhgap.a' is up to date. make[1]: Leaving directory `/home/jingjing/kent/src/hg/lib' cd protein/lib && make make[1]: Entering directory `/home/jingjing/kent/src/hg/protein/lib' make[1]: `../../../lib/i686/jkpbap.a' is up to date. make[1]: Leaving directory `/home/jingjing/kent/src/hg/protein/lib' ( cd cartReset && echo cartReset && make install) cartReset make[1]: Entering directory `/home/jingjing/kent/src/hg/cartReset' gcc cartReset.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -pthread -lssl -lcrypto /usr/lib/libpng.a -lm /usr/lib/mysql/libmysqlclient.a -lz gcc: /usr/lib/mysql/libmysqlclient.a: No such file or directory make[1]: *** [compile] Error 1 make[1]: Leaving directory `/home/jingjing/kent/src/hg/cartReset' make: *** [cartReset.install] Error 2 I don't know whether I have build the source tree successfully. And I also don't know whether I have building bedgraphtoBigwig successfully. Because there are only two file in the generated bin folder: jingjing@ubuntu:~/bin$ ls i686 pslCDnaFilter stringify Thanks! jingjing On Mon, Aug 1, 2011 at 7:09 PM, Greg Roe <[email protected]> wrote: > Hi jingjing, > > We only compile 64-bit versions on these utilities: > http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/ > > However, the source of these utilities are available as part of the Genome > Browser source tree. So you can build 32-bit versions: > > http://hgdownload.cse.ucsc.edu/admin/jksrc.zip > > Instructions for building from source are here (note that you do not need to > do every step if you are only building these two utilities): > > http://genome.ucsc.edu/admin/jk-install.html > > > Please let us know if you have any additional questions: [email protected] > > - > Greg Roe > UCSC Genome Bioinformatics Group > > > > On 8/1/11 8:28 AM, JINGJING JIN wrote: >> >> Hi all, >> >> I am so sorry there is not any file in the linux 86. >> >> I want to download the bedGraphToBigWig and fetchChromSizes. >> >> http://hgdownload.cse.ucsc.edu/admin/exe/linux.i386/ >> >> Thanks! >> >> jingjing >> > -- Best Regards, JIN JINGJING School of Computing National University of Singapore Email: [email protected] [email protected] Phone: +65 83179646 _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
