Hi Carsten, Using the Table Browser you can retrieve the exons of the mRNAs in the all_mrna table. Select the all_mrna table and BED format as your output. After clicking 'get output' select "Blocks plus 0 bases at each end." This will provide you with all the exons in the all_mra table.
I hope this is helpful. Please contact the mail list ([email protected]) again if you have any further questions. Katrina Learned UCSC Genome Bioinformatics Group On 8/5/11 12:36 AM, Carsten Raabe wrote: > Dear Madame, dear Sir, > > my name is Carsten and I am working at the institute of experimental > Pathology at Muenster University in Germany. I wonder whether it would > be possible to download all CDS exons contained within the human all > mRNA database separately . I tried to manage the download via the table > browser using the BED format, however there is no option like "CDS exon" > or "5'UTR exon" provided as it is in the UCSC gene annotation. > > In fact I would happy to know the corresponding exon positions in the > mRNA, or even the positions of translational start and stopcodon would > do equally well. > > Thanks a lot in advance, > > C. > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
