Hi Tim, Under 'Sequence Retrieval Region Options' (which appears after selecting 'genomic' and clicking submit), select "One FASTA record per gene."
Regards, --- Luvina Guruvadoo UCSC Genome Bioinformatics Group > > > On 8/9/2011 12:34 PM, Liu, Qing-Rong (NIH/NIDA/IRP) [E] wrote: >> Hi Luvina, >> >> Thank you very much for the instruction! >> >> I followed your instruction to get human FMR1 gene exon sequences. However, >> each exon has multiple sequences. Is there a way to limit the major exons? >> >> Thanks, >> >> Qing-Rong (Tim) Liu, Ph.D. >> Staff Scientist >> Behavior Neuroscience Research Branch >> NIDA/NIH >> 251 Bayview Blvd, Suite 200 >> Baltimore, MD21224 >> Tel: (443) 740-2731 >> Fax: (443) 740-2827 >> >> >> -----Original Message----- >> From: Luvina Guruvadoo [mailto:[email protected]] >> Sent: Tuesday, August 09, 2011 1:54 PM >> To: Liu, Qing-Rong (NIH/NIDA/IRP) [E] >> Cc: [email protected] >> Subject: Re: [Genome] Exon sequences >> >> Hi Tim, >> >> You can retrieve this information from the Table Browser (from main >> page, click on "Tables" on the top blue navigation bar). After selecting >> a clade, genome, and assembly of your choice, set the following: >> >> group: Genes and Gene Prediction Tracks >> track: choose a gene prediction track you would like to use (I'll use >> 'UCSC Genes' for this example) >> table: the default table will be the primary table for that track >> ('knownGene' in this case) >> region: genome (or enter the position) >> identifiers (names/accessions): click 'paste list' and enter the >> identifier(s), click 'submit' >> output format: sequence >> output file: enter a filename to save your results to a file, or leave >> blank to display results in the browser >> >> Click 'get output'. On the following page, select 'genomic' and click >> 'submit'. Select the appropriate options (5'UTR Exons, CDs Exons, 3'UTR >> Exons, etc). Click 'get sequence'. >> >> More information on how to use the Table Browser can be found here: >> http://genome.ucsc.edu/cgi-bin/hgTables#Help >> >> Please contact us again at [email protected] if you have any further >> questions. >> >> --- >> Luvina Guruvadoo >> UCSC Genome Bioinformatics Group >> >> On 8/9/2011 9:11 AM, Liu, Qing-Rong (NIH/NIDA/IRP) [E] wrote: >> >>> Dear Sir, >>> >>> Would you please tell me how to down load exon sequences from a unique gene? >>> >>> Best regards, >>> >>> Qing-Rong (Tim) Liu, Ph.D. >>> Staff Scientist >>> Behavior Neuroscience Research Branch >>> NIDA/NIH >>> 251 Bayview Blvd, Suite 200 >>> Baltimore, MD21224 >>> Tel: (443) 740-2731 >>> Fax: (443) 740-2827 >>> >>> _______________________________________________ >>> Genome maillist - [email protected] >>> https://lists.soe.ucsc.edu/mailman/listinfo/genome >>> >>> >> >> > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
