Good Morning Oriane: This is an interesting mix of Ensembl versions.
The hg18 assembly (NCBI36) was last used in Ensembl in their version 54. At that time, this gene CNTN3 was identified in Ensembl with their identifier: ENSG00000113805 and transcript ID: ENST00000394261 The UCSC gene track in hg18 refers to the Ensembl gene via the transcript ID: ENST00000394261, however, the link from the hg18 UCSC gene track goes to the current version of the Ensembl browser version 63 which is the human assembly GRCh37. In the Ensembl version 63, the transcript ID: ENST00000394261 is now associated with the Ensembl gene identifier: ENSG00000134115 which is CNTN6. The Ensembl version 63 CNTN3 gene identifer ENSG00000113805 is now associated with transcript ID: ENST00000263665 I would recommend working with the current human assembly version hg19 for current versions of the gene identifiers. --Hiram Oriane Mercati wrote: > I'm sorry, I forgot to mention that the problem occurs when choosing hg18 > in the browser. > Regards, > Oriane Mercati. > > ---------------------------- Message original ---------------------------- > Objet: error Ensembl interface > De: "omercati" <[email protected]> > Date: Mar 9 août 2011 18:55 > À: [email protected] > -------------------------------------------------------------------------- > > Dear UCSC team, > > I was looking for information about the gene CNTN3 located on chromosome > 3 (hg19 : 74,311,719-74,570,291). > When I clicked on it in the browser and then chose the link Ensembl in > the "Sequence and links to tools and databases" part, I actually got the > information about CNTN6. > Of course I could then access CNTN3 directly on the Ensembl site, but I > just wished to report this small problem. > > Thank you very much. > Best regards, > > Oriane Mercati > PhD Student > Institut Pasteur, Paris, France. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
