Hi Varun, We do not store gene annotations in GFF (or GTF) format. There is an option in the Table Browser to output files in "GTF - gene transfer format," but it has the limitation that the gene_id and transcript_id given for each annotation is the same. If that doesn't meet your needs, you will need to get your gene annotations in GenePred format (http://genome.ucsc.edu/FAQ/FAQformat.html#format9) and convert them to GFF using the genePredToGtf command-line utility. See:
http://genomewiki.ucsc.edu/index.php/Genes_in_gtf_or_gff_format To get from a list of genes to the annotations in GenePred format, you can use the Table Browser (http://genome.ucsc.edu/cgi-bin/hgTables). Choose a gene/gene prediction track, leave the table selected to the first one listed in the drop-down menu, paste your list of identifiers, and use "output format: all fields from selected table." If you have further questions, please feel free to send them to [email protected]. -- Brooke Rhead UCSC Genome Bioinformatics Group On 08/13/11 17:27, varun gupta wrote: > Hiii Everyone > Thanks for all the help. I have a question > If i have a list of genes can i get all the information for those genes in > GFF format? > All the relevant information in the gff format is required > > Regards > Varun > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
