Hi Vaibhav, To find information on the genomic size for a particular assembly, go to the gateway page (http://genome.ucsc.edu/cgi-bin/hgGateway) and select the appropriate clade, genome, and assembly. (Do not click the submit button)
Below your selections there is a blue link "(sequences)". Click on that. This will take you to information on the genome size for the assembly you selected. To find out more about the assembly, scroll down to the bottom of the page to where it says "Assembly details". If you have further questions, please contact the mailing list: [email protected]. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ---------- Forwarded message ---------- From: vaibhav jain <[email protected]> Date: Thu, Aug 18, 2011 at 8:50 AM Subject: [Genome] Rat effective genome size To: [email protected] Hi UCSC team, I want to use MACS on some sequencing data of Rat. There is a parameter required for the tool to run and which is effective genome size. I am a little confused with the effective genome size of rat. S I would request you to please tell me the effective genome size of rat. Thanks and regrds -- Vaibhav Jain Research Scholar @IGIB New Delhi, INDIA _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
