Hi list,
Sorry about this message. i just found this content in the README file:
Load your database table with the command:
hgBbiDbLink hg19 myLocalBamTrack /gbdb/hg19/bbi/myLocalFile.bam
Your index file is also there: /gbdb/hg19/bbi/myLocalFile.bai
These path names can also be URLs to an external .bam file (and .bai)
use that table name: myLocalBamTrack as the name on your track line:
track myLocalBamTrack
type bam
See also, an example trackDb entry: chimp/trackDb.denisova.ra
it Works!
On Thu, Aug 18, 2011 at 2:10 PM, Daofeng Li <[email protected]> wrote:
> Dear list,
>
> i am wondering if i want to add a bam track to a local installed mirror of
> UCSC browser, should i convert the .bam to .bed first?
> i do 'ls -d hg*' at src/hg/makeDB, i am not sure which program was used for
> loading a bam file.
> i also do search in this mailing list, this link
> http://www.mail-archive.com/[email protected]/msg02829.htmlmentions
> how to create the trackdb.ra file.
>
> Thanks for your response.
>
> Best.
> --
> Daofeng Li
> Postdoc Research Associate
> Department of Genetics
> Washington University in St.Louis School of Medicine
> 314-556-2832
>
>
--
Daofeng Li
Postdoc Research Associate
Department of Genetics
Washington University in St.Louis School of Medicine
314-556-2832
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