Hi Jennifer, I'm not sure what assembly you are interested in, but here is a list of the assemblies that contain the PicTar track:
C. elegans Mar. 2004 (ce2) D. melanogaster Apr. 2004 (dm2) Human May 2004 (hg17) Mouse Aug. 2005 (mm7) The Table Browser is the tool that you will want to use to extract gene targets and miRNA ids. To get to the Table Browser click on "Tables" from the blue navigation bar. Set the following: Select the clade, genome, and assembly that you are interested in. group: Regulation track: PicTar miRNA table: choose the table that you are interested in region: genome output format: selected fields from primary and related tables output file: file name (if you would like to save the output) click "get output" select the check box next to "name" click "get output" The is will give you the gene ids followed by the miRNA ids. Hope you find this useful. Please feel free to contact the mailing list ([email protected]) if you have further questions. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ---------- Forwarded message ---------- From: Barb, Jennifer (NIH/CIT) [E] <[email protected]> Date: Thu, Aug 18, 2011 at 2:02 PM Subject: [Genome] PicTar miRNA from the UCSC tables option To: "[email protected]" <[email protected]> Hello, Does anyone know which options to choose in the Tables download function on the browser in order to obtain a list of miRNA gene targets and their corresponding miRNA id numbers? thank you, Jennifer _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
