Hi there, I am working with the human X chromosome, and attempting to extract alignments across several mammals using data from UCSC and tools in Galaxy.
My problem is when I try to download to coordinates of the coding exons, several genes show up, but all of the genes in the attached list give me this error message: # No results returned from query. However, when I click through the UCSC website, using the interactive RefSeq Gene page, and follow the link for "CDS_FASTA_alignment" I can view the mammalian alignment I want. Do you know why the server isn't giving me the coordinates? And, is there an alternative way (perhaps through the UCSC server that I can extract the alignments *en masse*, instead of one-by-one? Thank-you, Melissa -- Melissa A. Wilson Sayres, PhD Miller Fellow University of California, Berkeley
NM_017856 NM_152581 NM_002641 NM_003662 NM_000330 NM_000284 NM_015884 NM_001037171 NM_002970 NM_152761 NM_002365 NM_031442 NM_152632 NM_000328 NM_000531 NM_021242 NM_144970 NM_000266 NM_024689 NM_005676 NM_003254 NM_153477 NM_033518 NM_203475 NM_006579 NM_006743 NM_017883 NM_003173 NM_006044 NM_005834 NM_006875 NM_017602 NM_002668 NM_006150 NM_003179 NM_005448 NM_016656 NM_007268 NM_173834 NM_016484 NM_001025265 NM_000206 NM_181673 NM_018486 NM_001042506 NM_006517 NM_004299 NM_145052 NM_032121 NM_001866 NM_000291 NM_015975 NM_032553 NM_024921 NM_000390 NM_001325 NM_021637 NM_021992 NM_207318 NM_017416 NM_018015 NM_018301 NM_017681 NM_173494 NM_002814 NM_018466 NM_000640 NM_033495 NM_006667 NM_145305 NM_003336 NM_002351 NM_000276 NM_003399 NM_016032 NM_006649 NM_019556 NM_152582 NM_001017436 NM_001017435 NM_001007551 NM_001017438 NM_018666 NM_173470 NM_001012989 NM_004709 NM_032508 NM_001013845 NM_001017980 NM_015922 NM_003491 NM_002910 NM_000513 NM_001048181 NM_001456 NM_006730 NM_001363 NM_023934 NM_014221 NM_018196 NM_016379 NM_205849 NM_174901 NM_173699 NM_002364 NM_002367 NM_177415 NM_012274 NM_022076 NM_006915 NM_019056 NM_205856 NM_173357 NM_001079900 NM_021015 NM_005635 NM_175711 NM_175729 NM_001034832 NM_013271 NM_007213 NM_001029896 NM_001098413 NM_001098406 NM_001472 NM_001098407 NM_001098408 NM_001098418 NM_001098405 NM_001098409 NM_001098410 NM_001468 NM_003785 NM_007003 NM_153183 NM_018159 NM_130777 NM_001079538 NM_020411 NM_003147 NM_130775 NM_014138 NM_001031745 NM_004493 NM_015107 NM_020922 NM_058163 NM_201222 NM_002625 NM_001015038 NM_207339 NM_138362 NM_130467 NM_014061 NM_001010862 NM_001006683 NM_019003 NM_004143 NM_001080851 NM_203303 NM_016500 NM_001029891 NM_173698 NM_013347 NM_016608 NM_177948 NM_032946 NM_001006938 NM_001012978 NM_001099686 NM_001031834 NM_018476 NM_022052 NM_001080425 NM_153333 NM_032621 NM_152278 NM_016303 NM_206915 NM_032926 NM_004780 NM_001002916 NM_000354 NM_031273 NM_001004308 NM_016383 NM_001017978 NM_173798 NM_178813 NM_032498 NM_139282 NM_001099685 NM_173571 NM_001080137 NM_001080138 NM_001080139 NM_001080140 NM_001080141 NM_001080142 NM_001080143 NM_001080144 NM_001080145 NM_001013628 NM_017666 NM_205833 NM_021796 NM_001078173 NM_001078171 NM_001078172 NM_001031705 NM_001013403 NM_004065 NM_032461 NM_012317 NM_022661 NM_013453 NM_145662 NM_032417 NM_138702 NM_016249 NM_001009609 NM_001009614 NM_152578 NM_001080790 NM_005364 NM_033085 NM_175868 NM_153478 NM_001080848 NM_032882 NM_017518 NM_001711 NM_021949 NM_005745 NM_000033 NM_004135 NM_000425 NM_006014 NM_001327 NM_139250 NM_080720 NM_018390 NM_013239 NM_000451 NM_172245 NM_002183 NM_001636 NM_004192 NM_178129 NM_005088 NM_004043 NM_145177 NM_004729 NM_002414 NM_005840 NM_005638 NM_002186 NM_203407 NM_001007524
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