Hello Nouria, We do not currently have plans to create the "RNA Genes" track on hg19. We suggest using the Genecode Genes track on hg19 (which contains has a fair number of RNA genes and can be filtered by biotype: http://www.gencodegenes.org/gencode_biotypes.html).
Alternatively, you can use the liftOver tool (http://genome.ucsc.edu/cgi-bin/hgLiftOver) to lift the items in the RNA Genes track on hg18 to hg19 and uploading them as a custom track. To use liftOver, you can download the RNA Genes track in BED format using the Table Browser (http://genome.ucsc.edu/cgi-bin/hgTables), then upload the file on the LiftOver page and convert from hg18 to hg19 (note that not every gene will convert successfully). When you get the "View Conversions" link, you can right-click and save the file. Once you have the converted file on your computer, you can go to the Custom Tracks page (http://genome.ucsc.edu/cgi-bin/hgCustom) and upload the file as a custom track. I hope this is helpful. If you have further questions, please feel free to contact us again at [email protected]. -- Brooke Rhead UCSC Genome Bioinformatics Group On 08/21/11 02:30, Nouria Hernandez wrote: > Hi, > > In the hg19 aseembly, RNA genes such as the small nuclear RNA genes and > genes transcribed by RNA polymerase III are not annotated. When will > these annotations be displayed on the hg19 assembly? For people working > on small nuclear RNA genes and RNA polymerase III genes, this would be a > huge help! > > Thanks a lot > > Nouria Hernandez > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
