Hi Gilad, There are 3 tables that contain absolute microarray expression values on the mm9 UCSC Genes track for the adar gene. The tracks and corresponding tables (which are in the hgFixed database) are:
For "GNF Expression Atlas 2 Data from GNF1M Mouse Chip": hgFixed.knownToGnfAtlas2All For "Rinn et. al Sex Gene Expression Data on MOE430A Chip": hgFixed.mouseRinnSex For "GNF Expression Atlas Data from U74a Mouse Chip": hgFixed.gnfMouseU74aAll The SCOP domain information comes from the ucscScop and scopDesc tables. I hope this is helpful. If you have further questions, please feel free to contact us again at [email protected]. -- Brooke Rhead UCSC Genome Bioinformatics Group On 08/21/11 01:20, Gilad Finkelstein wrote: > Hi > for a list of genes: > 1. grab the list of absolute Microarray Expression Data value per tissue > 2. Intersect any gene that belong to a specific SCOP domain > > What tables will contain such information > I can see all the data via a simple table browser query(example for mouse > adar1 gene) > http://genome.ucsc.edu/cgi-bin/hgGene?hgg_gene=uc008pzx.2&hgg_prot=Q99MU3&hgg_chrom=chr3&hgg_start=89534639&hgg_end=89557377&hgg_type=knownGene&db=mm9&hgsid=208225823 > > Thanks > Gilad Finkelstein > Erez Levanon Lab > Bar-Ilan University > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
