Hi Kerry, Please take a look at this previously answered mailing list:
https://lists.soe.ucsc.edu/pipermail/genome/2010-January/020985.html Also, here is a list of mirror sites that may be of interest to you: http://genomewiki.ucsc.edu/index.php/Other_genome_browsers#Other_genome_browsers Hope this helps! If you have further questions, please don't hesitate to contact the mailing list: [email protected]. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ---------- Forwarded message ---------- From: Kerry Bubb <[email protected]> Date: Thu, Aug 25, 2011 at 11:16 AM Subject: [Genome] Arabidopsis To: [email protected] Hello! I am interested in converting coordinates between releases of the plant, Arabidopsis thaliana. I can't seem to find a generally used tool for this in the plant community, so I would like to use your LiftOver tool, but I don't see an over.chain file for Arabidopsis. I realize that the main thrust of UCSC is not plants (I believe there are none on your main download page), but since it is such an analogous situation, it may be easy for you to generate the Arabidopsis LiftOver files. If you are willing to generate these files, I can provide better pointers, but as a starter, Arabidopsis genome sequences are available at TAIR: ftp://ftp.arabidopsis.org/home/tair/Sequences/whole_chromosomes/ Thank you very much! -Kerry _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
