Hi Flávia, The Table Browser is a useful tool for finding this information. The first step is to find the upstream and downstream regions around the telomeres. For instructions on how to do this, please see this previously answered question: https://lists.soe.ucsc.edu/pipermail/genome/2010-November/024296.html
Once you have a list of chromosome coordinates, you can paste this list back into the Table Browser to retrieve gene information. Make the following selections (in this example, I will use the human (hg19) assembly): group: Genes and Gene Prediction Tracks track: UCSC Genes table: knownGene region: click on 'define regions', paste in the list you created earlier (or upload as a file), click 'submit' output format: all fields from selected table Click get output. For more information on how to use the Table Browser, please refer to our help page: http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html I hope this information is helpful. Please contact us again at [email protected] if you have any further questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group On 8/30/2011 11:01 AM, Flávia Lamarão wrote: > Dears, > > Let me present myself, I am Flávia Lamarão a PhD student from Fiocruz > foundation, Brazil. > > I am making a bioinformatic course and I would like to know which is the > best way to have the most next 30 genes from telomeres points in each > chromossome. > > What do you suggest me to acomplish with this analysis? > > thank you and > > Best regards, > > > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
