It is recommended to use pslReps and pslCDnaFilter on your psl results. They have flexible and powerful filtering options way beyond BLAT's simple command-line options.
-Galt 9/9/2011 9:34 AM, Fathepure, Shakuntala: > > Recently, I have used Blat for blasting against my custom query and > reference sequence files. I got results. I need to change the threshold > parameters(Evalue) to get better hits. I went through the Blat help > information, but I could not find anything. I appreciate if you can let me > know how to set up the option parameters. > > Thank you, > > Shakuntala Fathepure > Dept. of Botany > Oklahoma State University > Stillwater, OK 74078 > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
