Hi, Chris! http://genomewiki.ucsc.edu/index.php/Blat_Scripts
I fixed the second script. It was screen-scraping the blat html output, but that had changed so that it couldn't identify the tag correctly. -Galt 9/13/2011 11:47 AM, Buxton Chris (NORTH BRISTOL NHS TRUST): > Hi, > > There are two perl scripts listed on > http://genomewiki.ucsc.edu/index.php/Blat_Scripts to enable batch submission > of sequences for homology comparisons to BLAT. > > I can get the submission one to work fine, but cant figure out why the second > script that parses the output from the first (parseBlatOutput) doesn't seem > to work with either html or psl format outputs from the batch submission > script? > > Any help would be much appreciated, > > Thanks > > Chris > > ******************************************************************************************************************** > > This message may contain confidential information. If you are not the > intended recipient please inform the > sender that you have received the message in error before deleting it. > Please do not disclose, copy or distribute information in this e-mail or take > any action in reliance on its contents: > to do so is strictly prohibited and may be unlawful. > > Thank you for your co-operation. > > NHSmail is the secure email and directory service available for all NHS staff > in England and Scotland > NHSmail is approved for exchanging patient data and other sensitive > information with NHSmail and GSi recipients > NHSmail provides an email address for your career in the NHS and can be > accessed anywhere > For more information and to find out how you can switch, visit > www.connectingforhealth.nhs.uk/nhsmail > > ******************************************************************************************************************** > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
