Greetings- I have a few questions regarding RefSeq data in the public mysql hg19 database.
1) Is there a way to know which version of a RefSeq appears in refFlat and refAli (i.e., NM_000014.4 instead of NM_000014)? 2) What is the source of exon genomic coordinates? BLAT? 3) If the answer to (2) is BLAT, then are the NCBI coordinates available also? What QC has been done to compare exon structures between BLAT and NCBI (splign) coordinates? ( I've scoured the NAR 2011 paper, the table browser, the mailing list, seqanswers, and google. Apologies if I somehow overlooked the answers to these. Thanks, Reece _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
