Hi Lizzy, You have exponential numbers in your chromosome addresses which means you will need to make sure that when you generate your bedGraph file you will need to print out 10000000.
For large data sets we recommend bigBed and bigWig data formats. Please take a look at this page to determine which format to choose: http://genomewiki.ucsc.edu/index.php/Selecting_a_graphing_track_data_format Hopefully this solves your issue. If you have further questions, please contact the mail list: [email protected]. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ---------- Forwarded message ---------- From: Elizabeth Ashley <[email protected]> Date: Thu, Sep 22, 2011 at 6:21 AM Subject: [Genome] error with custom track upload To: "[email protected]" <[email protected]> Hi I'm making progress but still getting an error when trying to upload custom tracks to the UCSC browser. The error is: Error File 'MCpupae_readtogo.wig' - track load error (track name='ct_MCpupae_6918'): invalid signed integer: "1e+07" My file is large, could this be the problem? The beginning of my file is below: track type=wiggle_0 name="MC pupae" description="DamID" color=0,0,0 visibility=1 useScore=1, scoreMin=0 scoreMax=6 "chr2L" 5461 5524 0.4454 "chr2L" 5525 5564 0.392 "chr2L" 5571 5633 0.4046 "chr2L" 5634 5656 0.3832 "chr2L" 5681 5735 0.342 "chr2L" 5736 5785 0.294 "chr2L" 5786 5826 0.3308 "chr2L" 5831 5890 0.3262 "chr2L" 5901 5952 0.2596 "chr2L" 5953 5985 0.2316 "chr2L" 6011 6068 0.2382 "chr2L" 6069 6109 0.2414 "chr2L" 6110 6161 0.2314 "chr2L" 6171 6223 0.2254 "chr2L" 6231 6290 0.286 "chr2L" 6291 6325 0.2854 "chr2L" 6341 6400 0.3222 "chr2L" 6401 6447 0.3148 "chr2L" 6448 6495 0.3828 "chr2L" 6496 6542 0.3668 Any help would be greatfully received! Thanks in advance lizzy _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
