Hi Michele, Our mailing list is setup to help users with very specific questions on using the UCSC Genome Browser. We do not have the resources to answer technical questions about the genome browser code. If you do have questions on how to use the Genome Browser, please email the mailing list: [email protected].
Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ---------- Forwarded message ---------- From: Michele Angelo Perrotta <[email protected]> Date: Thu, Sep 22, 2011 at 12:13 PM Subject: [Genome] Time and space complexity To: [email protected] Hi, I asked on one of the mailing lists about the time and the space complexity of Genome Browser and Table Browser. Luvina Guruvadoo answered me that there are many algorithms implemented in the two Browsers, so it's practically impossible to say something certain in general. Now, I want to ask you a more specific question (actually not really very specific), hoping it can be answered even with approximation. The operations that I have to execute are the following: 1 - Submit a genebank as an input to the Genome Browser ( http://genome.ucsc.edu/cgi-bin/hgGateway ) 2 - Get a FASTA of a promoter of a gene ( http://genome.ucsc.edu/cgi-bin/hgc ) 3 - Submit an input to the Table Browser and operate an intersection ( http://genome.ucsc.edu/cgi-bin/hgTables ) I hope it is possible to determine even an approximated esteem of complexity. Thank you in advance. -- Michele Angelo Perrotta _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
