Hi Casper, You can retrieve this information from the Table Browser (from main page, click on "Tables" on the top blue navigation bar). Make the following selections (in this example I'll use the human hg19 assembly):
clade: Mammal genome: Human assembly: Feb. 2009 (GRCh37/hg19) group: Comparative Genomics track: Conservation table: select a table, for example: Vertebrate El (phastConsElements46way) region: click 'define regions' and paste in (or upload) your coordinates. Click 'submit'. output format: all fields from selected table output file: enter a file name to save your results to a file, or leave blank to display results in your browser Click 'get output'. For more information on how to use the Table Browser, please refer to our help pages: http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html Feel free to contact us again at [email protected] if you have any further questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group On 9/25/2011 10:59 AM, Casper Shyr wrote: > > Dear all, > I would like to do the following: > For a given set of genomic coordinates, I am interested to > download Primate + Mammal, and Vertebrate Basewise conservation by Phylop, > as well as Primate + Mammal + Vertebrate conservation by PhastCons. I can > view them on the browser, but I wish to work with the actual data. Is such > info readily available for download? > > Thanks! > Sincerely, > Casper > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
