Hello, I'm trying to collect the log odds score for any conserved element in a gene by intersecting two tables but I'm unable to get an actual log score.
After selecting the chromosomal position of the genes I want I go to Tables. Then Under gene and Gene Prediction Tracks, UCSC Genes, I intersect the position I want with phastConsElements46wayPlacental, but the excel file I gather has no log odds scores. The BED table shows me the number of exons, the number of base pairs in each exon, and also some values which I'm unable to interpret that are related to the number of exons. Are these values the phastCon score presenting the exons of each gene? If so, why is the first number always 0? Is this the correct way of gathering the data I want (a conserve score for each gene), if so why am I not getting a score? If I'm doing this wrong I would appreciate any feedback on how to do it better. Thanks, Libia _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
