Hi,
Here I attached a figure from a paper who used UCSC genome browser viewer to visualize their results. We want to reproduce our data in a similar fashion. But I am not sure what they used a input to get the coverage information Thanks, Diya From: Dedeepya Vaka [mailto:[email protected]] Sent: Wednesday, October 12, 2011 9:56 AM To: '[email protected]' Subject: BED detail format Hello UCSC, I am trying to upload a bed file with 12 columns. However I am not able to see the block counts. When I view it in the browser I see no difference between the 6 column and 12 column format. Here I am pasting the sample 12 column bed format. chrY 59031406 59031428 HWUSI-EAS000_29:1:107:13171:8952#0 25 + 59031406 59031428 255,0,0 1 22 0 chrY 59031877 59031894 HWUSI-EAS000_29:1:118:17184:2540#0 25 - 59031877 59031894 255,0,0 1 17 0 chrY 59032463 59032487 HWUSI-EAS000_29:1:102:8204:2058#0 25 - 59032463 59032487 255,0,0 1 24 0 chrY 59032532 59032553 HWUSI-EAS000_29:1:49:14535:7055#0 25 + 59032532 59032553 255,0,0 1 21 0 Your help is greatly appreciated. Thanks, Diya Data Analyst Cancer Biology Program Sweet-Cordero Lab, Stanford University http://sweetcorderolab.stanford.edu/ ph: 650.725.4802
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