Hi, This may be a somewhat obvious question, but I can't seem to find a clear answer anywhere.
We are currently working with genotype data (where genotype-calls were made using Affymetrix birdseed software) annotated with human assembly hg18 (NCBI 36). Now, we consider switching our data to human assembly hg19 and I was wondering if we would need to redo the genotype-calling procedure using directly hg19 annotations? I am aware of the UCSC "LiftOver" software, which allows to convert data between different human genome assemblies, but I would like to know if this method would be sufficient or if it would be a better practice to redo the genotype-calling for our data. Many thanks, Jean-Francois _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
