Same issue: The data for HepG2 H3K4me1 is missing and GEO only has the BED alignments (not BAM)... -- Jake Biesinger Graduate Student Xie Lab, UC Irvine
On Tue, Oct 18, 2011 at 1:42 PM, Jacob Biesinger <[email protected]>wrote: > Scratch that. H1 is embryonic stem cells and HeLa cells were not included > in the paper. Sorry for the noise! > > -- > Jake Biesinger > Graduate Student > Xie Lab, UC Irvine > > > > On Tue, Oct 18, 2011 at 1:11 PM, Jacob Biesinger <[email protected] > > wrote: > >> Hi! >> >> Looking at >> http://genome.ucsc.edu/cgi-bin/hgFileUi?db=hg19&g=wgEncodeBroadHistone >> and >> http://hgdownload.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeBroadHistone/ >> it >> appears that the H3k4me1 data is missing for HeLa cells, but is referenced >> as being present in the recent chromatin marks paper >> http://www.nature.com/nature/journal/v473/n7345/full/nature09906.html >> >> Is this data not part of the data freeze? The data is available over at >> GEO but it looks like it's referenced under H1 instead of Helas. Is this >> accurate? >> -- >> Jake Biesinger >> Graduate Student >> Xie Lab, UC Irvine >> >> > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
