Hi Eriko, I took a look at the .wig file located here: http://www.ncbi.nlm.nih.gov/projects/geo/query/acc.cgi?acc=GSM763529. You may just need to turn on the track in order to view it in the Genome Browser. After uploading the custom track, click on "go to genome browser", then under the 'Custom Tracks' group (located below browser), turn on the track by selecting 'dense' or 'full' from the drop down menu and click 'refresh'. If you look at the first line of the .wig file, the visibility is set to 0 (hide) by default. You can also manually set the visibility to 1 (dense) or 2 (full). Please see the following page for more information on custom tracks: http://genome.ucsc.edu/goldenPath/help/customTrack.html.
Please contact us again at [email protected] if you have any further questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group On 10/18/2011 11:50 AM, eriko shimada wrote: > To Whom it May Be of Concern, > I am trying to look at an RNA-seq Data done on a mitochondrial sample > that contains mainly mitochondrial but also a few nuclear genes. > > The GSE number from gene expression omnibus is GSE30772. > But evertime I load it, the screen shows no data, even for locations that I > should expect a nuclear gene ( rpph1, rmrp) > > 1. Can I look at mitochondrial genomes using this program? > 2. What am I doing in correctly to load the .wig file? > (I go to add custom tracks, select the file location and click load). > > > Thank you. > > Sincerely yours, > > Eriko Shimada > Graduate Student > Dept of Pathology and Laboratory Medicine > Teitell Laboratory > Univ. of California, Los Angeles. > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
