Hi Falak, Two issues here. I think the blank filter page is a bug when using the combination of a custom track and bigwigs. We've logged it and an engineer will be looking into it.
Second, GREAT expects a bed file that identifies peaks in signal data. You would need to run a peak caller on your signals. However, we don't have such a tool - though there are several available. You might try Googling "chip-seq peak calling" or something similar. Please let us know if you have any additional questions: [email protected] - Greg Roe UCSC Genome Bioinformatics Group On 10/17/11 9:43 AM, Sher, Falak wrote: > Hello Folks, > > I am working on the Custom tracks (BigWig files from ChIP-Seq dat) using UCSC > table browser. I need output file format BED for GREAT. However, when I click > the “get output” button I see the following message: > “The Table Browser's output limit of 100,000 data values was reached. Please > use Table Browser controls such as filtering to trim the number of data > values” > If I go back to the filtering option of the table browser (create) I don’t > see any option to adjust data values (lines) rather there are only two > options (buttons) submit and cancel. > Please help to fix the problem, > > Falak > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
