Dear all, I do face the following problem I would like to download certain regions (>>> RNA exons, detected by us)) of the human genome not only as simple fastA file containing the corresponding human genomic sequence (>>> which would know how to handle), but in addition I would like to extract these regions out of a whole genome alignment (mammal-wide) if possible. Furthermore I would like to sort the alignment out-put according my RNA exon orientation to perform phylogenetic analyses. I do have a custom made script for it however it works very slow which is mainly due to huge size of the alignment files.
Sorry, I am afraid I might asked this one already however I failed to find an answer in the FAQ lists. Thanks a lot in advance and sorry for inconvenience I might have caused. Cheers, Carsten PS. I am afraid I might have asked this one already long time back, however I failed to find an answer in your FAQ lists or in my personal email. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
