Hi Nasrine, The tracks that you are seeing on the UCSC Genome Browser are custom tracks that Sanger uploaded to our site and are linking to. If you have questions about their uploaded data, you will need to contact them. If the data is available for Affy 500k, it could be uploaded as a custom track provided that it is in a format that we accept. Here is the information on custom tracks:
http://genome.ucsc.edu/cgi-bin/hgCustom If you have questions about the UCSC Genome Browser, please email the mailing list: [email protected]. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ---------- Forwarded message ---------- From: Bendjilali, Nasrine <[email protected]> Date: Thu, Nov 3, 2011 at 3:02 PM Subject: [Genome] question related to viewing copy number variation (CNV) on the UCSC browser To: "[email protected]" <[email protected]> Hi, Form The Welcome trust website http://www.sanger.ac.uk/humgen/cnv/data/cnv_data/display/ you can browse CNV data for a Hap Hap individual where it directs you to the UCSC genome . However, the racks that are shown are only for the WGTP array and not for the Affy 500k when browsing by sample. My question is for an individual Hap Map sample, can you view the CNVs from Affy500k on the UCSC genome browser ? Thanks, _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
