Hi Simona, You can tell the direction of transcription by looking at the arrowheads which point to the left or right. In your example, the arrowheads point to the left, which indicates this gene is transcribed from 5' (right) to 3' (left). Clicking the 'reverse' button flips the display to 3' --> 5'. We have a number of resources which may help you understand the Genome Browser display: http://genome.ucsc.edu/training.html.
Please contact us again at [email protected] if you have any further questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group On 11/8/2011 8:03 AM, Pedrotti, Simona wrote: > Hi, > > I'm trying to download the alignment for RBM9 (position > chr15:76,921,050-76,925,979) but I'm not able to get the pre-mRNA strand- it > only gives me the reverse strand. lso if I click on the REVERS button it > changes the above scheme but the aligned sequences I download are always the > complementary strand. Is there anybody that can help me?? Thanks, > > Simona > > > > > Simona Pedrotti, Ph.D. > Postdoctoral Associate > Department of Pathology and Immunology > Baylor College of Medicine, > One Baylor Plaza, Room: 223B > Houston, TX 77030 > Phone: (713) 798 5021 > Fax: (713) 798 3121 > E-mail: [email protected] > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
