Hello Shiri, Unfortunately we cannot provide advice on scientific direction. You may find these contig-related tracks useful:
http://genome.ucsc.edu/cgi-bin/hgTrackUi?g=ctgPos http://genome.ucsc.edu/cgi-bin/hgTrackUi?g=ctgPos2 For any of the items in the track you can see more information about that item by clicking on it in the main display. This should take you to a details page about that item. If you have questions regarding browser usage feel free to contact the mailing list at [email protected]. Regards, Pauline Fujita UCSC Genome Bioinformatics Group http://genome.ucsc.edu On 11/9/11 3:12 AM, [email protected] wrote: > > Hi, > I have been using your RNA seq Browser to track the 5' UTR of a specific > transcript. Many contigs are displayed. Among them is contig number 69361 with > fpkm of 6.12. > Here is the link: > > http://genome.ucsc.edu/cgi-bin/hgTracks > > I was wondering whether this transcript is real and how would we know so...it > is > identical to the genomic sequence but this area is in between two > genes....could > it be that there is a geneomic amplification and not RNA seq amplification? > How > can we be sure this contig is real? This is very important to my resarch, I > would appreciate your concern. > > Thank you, > Shiri Levy > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
