Hi Daofeng, The DCC number is assigned to each experiment based on when files for that experiment were originally received by UCSC. The best way to see what files are associated with a DCC accession, is to use file search: http://genome.ucsc.edu/cgi-bin/hgFileSearch?db=mm9
Where you see the pull-down menus towards the bottom, select UCSC Accession from the top one and then enter your accession of interest into the text field. This will pull up all the files associated with wgEncodeEM001436 and will allow you to download them. If you click on the little folder icon, it will take you to a list of all the files in that track (other tissue/antibody combinations from that institution). You can also use the advanced tab of track search to see what data corresponding to that accession are available for display in the browser: http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm9&hgt_tSearch=1&tsCurTab=advancedTab We submit the files to GEO, in most cases, after we've released the files to our public server. Then there is some lag in time between when they're available at GEO and when they have their GEO numbers displayed in the browser. However, if you look at our genome-preview server, you'll get a better idea of which files have GEO numbers. GEO accessions are added fairly quickly to genome-preview, but because of our many competing demands, may take a while to get out to the public site. Genome-preview (http://genome-preview.ucsc.edu/) allows users to preview tracks/data before they have been through our quality assurance process. Because genome-preview contains pre-release data, please use discretion when downloading and viewing data from genome-preview as it may still be undergoing changes and improvements. Please contact the mail list ([email protected]) again if you have any further questions. Katrina Learned UCSC Genome Bioinformatics Group On Mon Nov 14 19:25:45 2011, Daofeng Li wrote: > > Dear UCSC admins, > > I just noticed that there were DCC Accessions for the ENCODE data on UCSC > Genome Browsers. > Would you mind to tell me how could i get the relationships of this DCC > accession (wgEncodeEM001436) between the file names > (wgEncodeLicrHistoneBmarrowH3k4me1MAdult8wksC57bl6StdSig)? Is there a file > describe that? > And it seems not every DCC accession have a corresponding GSM number? Does > this means the GSM data not released yet? > > Thanks in advance for any response. > > Best wishes. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
