Hi Wenxin, Save your Excel file as a space delimited text file in BED format (http://genome.ucsc.edu/FAQ/FAQformat.html#format1), e.g.:
chr21 32986714 33086453 chr7 27210211 27213955 chr3 32986714 33086453 chr5 27210211 27213955 Then upload that file as a custom track (http://genome.ucsc.edu/cgi-bin/hgCustom). Next go to the table browser (http://genome.ucsc.edu/cgi-bin/hgTables), select your custom track, set region to 'genome', output format to 'sequence' and get output. The resulting file will contain the sequence of the uploaded positions. Please let us know if you have any additional questions: [email protected] - Greg Roe UCSC Genome Bioinformatics Group On 11/9/11 1:43 PM, Zou, Wenxin wrote: > Dear Sir/Madam, > > I have an Exel file contains about thousand probe's coordinates (UCSC genome > coordinates) and wonder if there is a way to retrieve all the probe sequences > in a batch style instead of individually doing so. Thank you for your early > reply and appreciate your kind help. > > Sincerely yours, > > Wenxin > _______________________________________________ > Genome-mirror mailing list > [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome-mirror _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
