Hello, Varun. It would be pretty easy to do what you're suggesting by using the Table Browser. If you're unfamiliar with the Table Browser, please have a look at the Table Browser User's Guide at http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html.
To obtain a list of genes between a certain set of coordinates in the human genome, follow the following steps: 1. From http://genome.ucsc.edu, click "Tables" in the blue navigation bar at the top of the screen 2. Set the following: Clade: Mammal Genome: Human Assembly: Feb. 2009 (GRCh37/hg19) Group: Genes and Gene Prediction Tracks Track: RefSeq Genes (or any other track containing genes you're interested in) Table: refGene Region: Set to "position" and enter the coordinates you're interested in, chr5:1000000-2000000 in this case Output format: selected fields from primary and related tables 3. Click the "get output" button 4. Select the fields you want displayed in your results 5. Click the "get output" button Please contact us again at [email protected] if you have any further questions. --- Steve Heitner UCSC Genome Bioinformatics Group -----Original Message----- From: [email protected] [mailto:[email protected]] On Behalf Of varun gupta Sent: Thursday, November 17, 2011 9:09 AM To: [email protected] Subject: [Genome] List of genes between 2 coordinates Hi Everyone Thanks for all your support. I have a question If i want to know the list of genes which are present between 2 coordinates how can i do it on ucsc browser For eg on chr5 between coordinates 1,000,000 - 2,000,000 tell me all the genes which are present(name of the genes).(this is just an example i took). Hope to hear from you guys Regards Varun _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
