Hi, Filip! wgRna is a bed 9 format, not genePred. That's what is making the utility genePredToGtf crash.
You may be able to get what you need usubg the table browser (click the"Tables" top menu). Just select the group Genes and Gene Prediction Tracks. Choose wgRna which is listed as track sno/miRNA. Then simply choose gtf output for output format. Click the get-output button. -Galt > On 11/17/2011 8:12 AM, Filip Pattyn wrote: >> > Dear, >> > >> > I would like to extract a gtf file from a genePred and followed the >> > guidelline on >> > http://genomewiki.ucsc.edu/index.php/Genes_in_gtf_or_gff_format >> > >> > My goal is to create a gtf with all miRNAs and snoRNAs from human by >> > using the command >> > /opt/UCSCtools/genePredToGtf hg19 wgRna wgRna.gtf >> > I'm using the correctly compiled version (linux 64bit) but can't get >> > results. The only output is 'Segmentation fault'. >> > >> > Can you help me further please? >> > >> > Best regards, >> > >> > Filip >> > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
