Hello, Daniel. One of our engineers also pointed out that these liftOver files are currently available on our test server:
http://hgdownload-test.cse.ucsc.edu/goldenPath/gorGor3/liftOver/ http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/liftOver/ Please be aware that since these files have not yet been released to the public site, they are still undergoing testing and may be subject to change. Please contact us again at [email protected] if you have any further questions. --- Steve Heitner UCSC Genome Bioinformatics Group -----Original Message----- From: [email protected] [mailto:[email protected]] On Behalf Of DanielWTang Sent: Friday, November 18, 2011 3:36 AM To: [email protected] Subject: [Genome] liftOver support for Gorilla_gorilla.gorGor3.63 assembly Hi, I am using liftOver results as part of my master thesis by comparing human genome and other primates genome. And I noticed that on the liftOver only supports for gg1 genome. Would you please generate the overchain files for the Gorilla_gorilla.gorGor3 (Release 63 Jun2011)? I need both overchain files for gg3tohg19 and hg19togg3. Or if there's an issue, could you please send me a protocol and the scripts as well so I can make the overchain files myself? Best regards, Daniel W. Tang _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
