Hi Minou, The track hub you are viewing is not hosted or generated here at UCSC. We suggest you try contacting the lab who generated this data hub at the Washington University of St. Louis for more information: [email protected] <mailto:[email protected]>
Please contact us again at [email protected] if you have any further questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group On 11/18/2011 6:44 AM, Minou Bina wrote: > > I expected to see the position of CGs in the genome browser to coincide with > the position of CpG methylation bars for > > the "track hubs" http://genome.ucsc.edu/cgi-bin/hgHubConnect > Roadmap Epigenomics Human Epigenome Atlas Release I, VizHub at Washington > University in St. Louis hg18 > > > The expectation was not met for CGs in the promoter of Sp1 gene > > (it workeed for a few region but not for others) > > > For example, check the region chr12:52,060,198-52,060,258 for hg18 > > > > Also see the attached file (Checking_CpG_metylation_Nov_15_2011.pdf) > > the position of vertical blue bars do not coincide with the position of CG > dinucleotides in the genome browser. > > Minou Bina > Purdue University > > > > > > ----- Original Message ----- > From: "Katrina Learned"<[email protected]> > To: "Minou Bina"<[email protected]> > Cc: [email protected] > Sent: Thursday, November 17, 2011 7:48:12 PM > Subject: Re: [Genome] new feature: Track Data Hubs > > Hi Minou, > > Can you please provide more information (via this mailing list: > [email protected] ) as to what you are expecting to see and how the items > you see differ from what you expect? > > Thank you, > > Katrina Learned > UCSC Genome Bioinformatics Group > > On 11/15/11 11:21 AM, Minou Bina wrote: > > Hi > > Today, we encountered a problem with > > the "track hubs" http://genome.ucsc.edu/cgi-bin/hgHubConnect for displaying > CpG methylation patterns > > For some regions, it worked > > For some regions, CpG did not match the position of methylation sites > > See the attached file > > Minou Bina > Purdue University > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
