Hi, I created bedgraph from bam files using genomeCoverageBed. The bedgraph file looks good. Then I created bigwig file from bedgraph using bedGraphToBigWig.
I put the bigwig on a webserver. When I view the bigwig file on the UCSC genome browser, I see some weird things. 1. The areas with zero coverage are shown with flat high coverage. The track is created as track type=bigWig name="ABC Coverage" visibility=full color=200,100,0 altColor=0,100,200 bigDataUrl=http:/myserver/ABC.bw Please help Thanks Darshan _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
